KPM 4.0 Standalone
We have also developed a standalone version of KeyPathwayMiner. You can download
it as a tar or a zip file. NOTE: The standalone version available here is still 4.0 and not the latest 5.0. An update to 5.0 is currently under development.
You can download the following (Right click--> Save Link as...) by clicking on the links.
A sample network
Sample gene expression data
Epigenetics (methylation) data
PPI network from Ulitsky et al. 2008
Huntington's disease gene expression data (down-regulated)
Huntington's disease gene expression data (up-regulated)
Huntington's disease gold standard extracted from KEGG pathways for Calcium signalling and Huntington's disease.
Webservice usage example in R:
This usage example consists of two files:
- RESTful_KeyPathwayMiner.r defines methods for accessing the RESTful API programmatically in R
- usage_examples_KeyPathwayMiner.r uses this methods in a few example calls using demo data provided further above. To use this code you can clone it via https://gist.github.com/mlist/86d80de64b376c1346d0