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If you find KeyPathwayMiner useful please cite
  • Alcaraz N, Pauling J, Batra R, Barbosa E, Junge A, Christensen AGL, Azevedo V, Ditzel HJ, Baumbach J (2014) KeyPathwayMiner 4.0: Condition-specific pathway analysis by combining multiple omics studies and networks with Cytoscape. BMC Syst Biol 2014 Aug 19;8(1):99. (download from BMC).

Other References

  1. Baumbach J, Friedrich T, Koetzing T, Kromer A, Mueller J, Pauling J (2012) Efficient algorithms for extracting biological key pathways with global constraints. Proceedings of the Genetic and Evolutionary Computation Conference, GECCO 2012, 2012, 169-176. (download from ACM)
  2. Alcaraz N, Friedrich T, Koetzing T, Krohmer A, Mueller J, Pauling J, Baumbach J (2012) Efficient key pathway mining - Combining networks and OMICS data. Integr Biol., 2012, 4 (7), 756 - 764. PubMed (download from RSC)
  3. Alcaraz NM, Kucuk H, Weile J, Wipat A, Baumbach J (2011) KeyPathwayMiner - Detecting case-specific biological pathways by using expression data. Int Math. 2011, 7:4, 299-313. (download from Tayler and Francis Online)